Index

_

__init__() (ClockSettings method) (ColoredNoiseFilterState method), [1], [2] (CosineEncoderSettings method), [1], [2] (CounterSettings method) (DNSSLFPSettings method), [1], [2], [3] (DNSSSpikeSettings method), [1], [2], [3] (DNSSSynthSettings method), [1], [2] (DynamicColoredNoiseSettings method), [1], [2] (EEGSynthSettings method), [1], [2] (PinkNoiseSettings method), [1], [2] (SinGeneratorSettings method), [1], [2] (SpiralGeneratorSettings method), [1], [2] (Velocity2LFPSettings method), [1] (Velocity2SpikeSettings method), [1] (VelocityEncoderSettings method), [1] (WhiteNoiseSettings method), [1], [2]

A

ADD (DNSSSynth attribute), [1], [2] (EEGSynth attribute), [1], [2] (VelocityEncoder attribute), [1] alpha (DynamicColoredNoiseState attribute), [1], [2] alpha_freq (EEGSynthSettings attribute), [1], [2]

amp (SinGeneratorSettings attribute), [1], [2] (SinGeneratorState attribute), [1], [2] ang_freq (SinGeneratorState attribute), [1], [2] angular_freq (SpiralGeneratorSettings attribute), [1], [2] angular_phase (SpiralGeneratorSettings attribute), [1], [2]

B

baseline (CosineEncoderSettings attribute), [1], [2] (CosineEncoderState attribute), [1], [2], [3], [4], [5]

baseline_rate (Velocity2SpikeSettings attribute), [1] BETA_ENCODER (Velocity2LFP attribute), [1]

C

ch_axis (CosineEncoderState attribute), [1], [2], [3], [4], [5] CLIP_BETA (Velocity2LFP attribute), [1] CLIP_RATE (Velocity2Spike attribute), [1] Clock (class in ezmsg.simbiophys) CLOCK (DNSSSynth attribute), [1], [2] (EEGSynth attribute), [1], [2] ClockProducer (class in ezmsg.simbiophys) ClockSettings (class in ezmsg.simbiophys) ClockState (class in ezmsg.simbiophys) coeffs (ColoredNoiseFilterState attribute), [1], [2] ColoredNoiseFilterState (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dynamic_colored_noise), [1] compute_kasdin_coefficients() (in module ezmsg.simbiophys) (in module ezmsg.simbiophys.dynamic_colored_noise), [1] configure() (DNSSSynth method), [1], [2] (EEGSynth method), [1], [2] (Velocity2LFP method), [1] (Velocity2Spike method), [1] (VelocityEncoder method), [1]

COORDS (VelocityEncoder attribute), [1] CosineEncoderSettings (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.cosine_encoder), [1] CosineEncoderState (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.cosine_encoder), [1] CosineEncoderTransformer (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.cosine_encoder), [1] CosineEncoderUnit (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.cosine_encoder), [1] Counter (class in ezmsg.simbiophys) CounterSettings (class in ezmsg.simbiophys) CounterTransformer (class in ezmsg.simbiophys) CounterTransformerState (class in ezmsg.simbiophys) cutoff (PinkNoiseSettings attribute), [1], [2]

D

delay_line (ColoredNoiseFilterState attribute), [1], [2] dispatch_rate (ClockSettings attribute) DNSSLFPProducer (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.lfp), [1] DNSSLFPSettings (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.lfp), [1] DNSSLFPState (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.lfp), [1] DNSSLFPUnit (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.lfp), [1] DNSSSpikeProducer (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.spike), [1] DNSSSpikeSettings (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.spike), [1]

DNSSSpikeState (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.spike), [1] DNSSSpikeUnit (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.spike), [1] DNSSSynth (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.synth), [1] DNSSSynthSettings (class in ezmsg.simbiophys.dnss) (class in ezmsg.simbiophys.dnss.synth), [1] DynamicColoredNoiseSettings (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dynamic_colored_noise), [1] DynamicColoredNoiseState (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dynamic_colored_noise), [1] DynamicColoredNoiseTransformer (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dynamic_colored_noise), [1] DynamicColoredNoiseUnit (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.dynamic_colored_noise), [1]

E

EEGSynth (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.eeg), [1] EEGSynthSettings (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.eeg), [1] ezmsg.simbiophys module ezmsg.simbiophys.cosine_encoder module ezmsg.simbiophys.dnss module ezmsg.simbiophys.dnss.lfp module ezmsg.simbiophys.dnss.pattern_match module ezmsg.simbiophys.dnss.spike module ezmsg.simbiophys.dnss.synth module ezmsg.simbiophys.dnss.wfs module

ezmsg.simbiophys.dynamic_colored_noise module ezmsg.simbiophys.eeg module ezmsg.simbiophys.noise module ezmsg.simbiophys.oscillator module ezmsg.simbiophys.system module ezmsg.simbiophys.system.velocity2ecephys module ezmsg.simbiophys.system.velocity2lfp module ezmsg.simbiophys.system.velocity2spike module ezmsg.simbiophys.util module

F

filter_states (DynamicColoredNoiseState attribute), [1], [2] find_pattern_start() (in module ezmsg.simbiophys.dnss.pattern_match), [1] freq (SinGeneratorSettings attribute), [1], [2] fs (DNSSLFPSettings attribute), [1], [2], [3] (DNSSSpikeSettings attribute), [1], [2], [3] (EEGSynthSettings attribute), [1], [2] (PinkNoiseSettings attribute), [1] (SinGeneratorSettings attribute), [1] (SpiralGeneratorSettings attribute), [1] (WhiteNoiseSettings attribute), [1]

I

init_random() (CosineEncoderState method), [1], [2] initial_beta (DynamicColoredNoiseSettings attribute), [1], [2]

INPUT_SIGNAL (Velocity2LFP attribute), [1] (Velocity2Spike attribute), [1] (VelocityEncoder attribute), [1]

K

KERNEL_INSERT (DNSSSynth attribute), [1], [2]

L

LFP (DNSSSynth attribute), [1], [2] (VelocityEncoder attribute), [1] lfp_gen (DNSSLFPState attribute), [1], [2] lfp_generator() (in module ezmsg.simbiophys.dnss) (in module ezmsg.simbiophys.dnss.lfp), [1]

lfp_pattern (DNSSSynthSettings attribute), [1], [2] load_from_file() (CosineEncoderState method), [1], [2] loc (WhiteNoiseSettings attribute), [1], [2]

M

max_velocity (Velocity2LFPSettings attribute), [1] min_rate (Velocity2SpikeSettings attribute), [1] MIX_NOISE (Velocity2LFP attribute), [1] mod (CounterSettings attribute) mode (DNSSLFPSettings attribute), [1], [2], [3] (DNSSSpikeSettings attribute), [1], [2], [3] (DNSSSynthSettings attribute), [1], [2] model_file (CosineEncoderSettings attribute), [1], [2] modulation (CosineEncoderSettings attribute), [1], [2] (CosineEncoderState attribute), [1], [2], [3], [4], [5] modulation_depth (Velocity2SpikeSettings attribute), [1] module ezmsg.simbiophys ezmsg.simbiophys.cosine_encoder ezmsg.simbiophys.dnss ezmsg.simbiophys.dnss.lfp ezmsg.simbiophys.dnss.pattern_match ezmsg.simbiophys.dnss.spike ezmsg.simbiophys.dnss.synth ezmsg.simbiophys.dnss.wfs ezmsg.simbiophys.dynamic_colored_noise ezmsg.simbiophys.eeg ezmsg.simbiophys.noise ezmsg.simbiophys.oscillator ezmsg.simbiophys.system ezmsg.simbiophys.system.velocity2ecephys ezmsg.simbiophys.system.velocity2lfp ezmsg.simbiophys.system.velocity2spike ezmsg.simbiophys.util

N

n_ch (DNSSLFPSettings attribute), [1], [2], [3] (DNSSSpikeSettings attribute), [1], [2], [3] (DNSSSynthSettings attribute), [1], [2] (EEGSynthSettings attribute), [1], [2] (SinGeneratorSettings attribute), [1], [2] (WhiteNoiseSettings attribute), [1], [2] n_dispatch (ClockState attribute) n_lfp_sources (Velocity2LFPSettings attribute), [1]

n_poles (DynamicColoredNoiseSettings attribute), [1], [2] n_time (DNSSSynthSettings attribute), [1], [2] (EEGSynthSettings attribute), [1], [2] network() (DNSSSynth method), [1], [2] (EEGSynth method), [1], [2] (Velocity2LFP method), [1] (Velocity2Spike method), [1] (VelocityEncoder method), [1] NOISE (EEGSynth attribute), [1], [2]

O

OSC (EEGSynth attribute), [1], [2] output_ch (CosineEncoderSettings attribute), [1], [2] (CosineEncoderState property), [1], [2] (Velocity2LFPSettings attribute), [1] (Velocity2SpikeSettings attribute), [1] (VelocityEncoderSettings attribute), [1] output_fs (DynamicColoredNoiseSettings attribute), [1], [2] (Velocity2LFPSettings attribute), [1] (Velocity2SpikeSettings attribute), [1] (VelocityEncoderSettings attribute), [1]

output_gain (DynamicColoredNoiseState attribute), [1], [2] OUTPUT_SIGNAL (DNSSSynth attribute), [1], [2] (EEGSynth attribute), [1], [2] (Velocity2LFP attribute), [1] (Velocity2Spike attribute), [1] (VelocityEncoder attribute), [1]

P

pattern (DNSSLFPSettings attribute), [1], [2], [3] pd (CosineEncoderState attribute), [1], [2], [3], [4], [5] phase (SinGeneratorSettings attribute), [1], [2] (SinGeneratorState attribute), [1], [2] PINK_NOISE (Velocity2LFP attribute), [1]

PinkNoise (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.noise), [1] PinkNoiseProducer (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.noise), [1] PinkNoiseSettings (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.noise), [1]

R

r_amp (SpiralGeneratorSettings attribute), [1], [2] r_mean (SpiralGeneratorSettings attribute), [1], [2] radial_freq (SpiralGeneratorSettings attribute), [1], [2]

radial_phase (SpiralGeneratorSettings attribute), [1], [2] RATE_ENCODER (Velocity2Spike attribute), [1] rng (DynamicColoredNoiseState attribute), [1], [2]

S

sample_remainder (DynamicColoredNoiseState attribute), [1], [2] samples_per_bin (DynamicColoredNoiseState attribute), [1], [2] scale (DynamicColoredNoiseSettings attribute), [1], [2] (WhiteNoiseSettings attribute), [1], [2] seed (CosineEncoderSettings attribute), [1], [2] (DynamicColoredNoiseSettings attribute), [1], [2] (Velocity2LFPSettings attribute), [1] (Velocity2SpikeSettings attribute), [1] (VelocityEncoderSettings attribute), [1] SETTINGS (Clock attribute) (CosineEncoderUnit attribute), [1], [2] (Counter attribute) (DNSSLFPUnit attribute), [1], [2], [3] (DNSSSpikeUnit attribute), [1], [2], [3] (DNSSSynth attribute), [1], [2] (DynamicColoredNoiseUnit attribute), [1], [2] (EEGSynth attribute), [1], [2] (PinkNoise attribute), [1], [2] (SinGenerator attribute), [1], [2] (SpiralGenerator attribute), [1], [2] (Velocity2LFP attribute), [1] (Velocity2Spike attribute), [1] (VelocityEncoder attribute), [1] (WhiteNoise attribute), [1], [2]

SinGenerator (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.oscillator), [1] SinGeneratorSettings (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.oscillator), [1] SinGeneratorState (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.oscillator), [1] SinProducer (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.oscillator), [1] smoothing_tau (DynamicColoredNoiseSettings attribute), [1], [2] speed_modulation (CosineEncoderSettings attribute), [1], [2] (CosineEncoderState attribute), [1], [2], [3], [4], [5] SPIKE (DNSSSynth attribute), [1], [2] SPIKE_EVENT (Velocity2Spike attribute), [1] spike_event_generator() (in module ezmsg.simbiophys.dnss) (in module ezmsg.simbiophys.dnss.spike), [1] spike_gen (DNSSSpikeState attribute), [1], [2] SPIKES (VelocityEncoder attribute), [1] SpiralGenerator (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.oscillator), [1] SpiralGeneratorSettings (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.oscillator), [1] SpiralGeneratorState (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.oscillator), [1] SpiralProducer (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.oscillator), [1]

T

t_0 (ClockState attribute) template (CounterTransformerState attribute) (DNSSLFPState attribute), [1], [2] (DNSSSpikeState attribute), [1], [2] (SinGeneratorState attribute), [1], [2] (SpiralGeneratorState attribute), [1], [2] (WhiteNoiseState attribute), [1], [2]

V

validate() (CosineEncoderState method), [1], [2] Velocity2LFP (class in ezmsg.simbiophys.system.velocity2lfp), [1] Velocity2LFPSettings (class in ezmsg.simbiophys.system.velocity2lfp), [1]

Velocity2Spike (class in ezmsg.simbiophys.system.velocity2spike), [1] Velocity2SpikeSettings (class in ezmsg.simbiophys.system.velocity2spike), [1] VelocityEncoder (class in ezmsg.simbiophys.system.velocity2ecephys), [1] VelocityEncoderSettings (class in ezmsg.simbiophys.system.velocity2ecephys), [1]

W

WAVEFORMS (Velocity2Spike attribute), [1] WhiteNoise (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.noise), [1] WhiteNoiseProducer (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.noise), [1]

WhiteNoiseSettings (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.noise), [1] WhiteNoiseState (class in ezmsg.simbiophys) (class in ezmsg.simbiophys.noise), [1]