Source code for ezmsg.sigproc.diff

"""
Compute differences along an axis.

.. note::
    This module supports the :doc:`Array API standard </guides/explanations/array_api>`,
    enabling use with NumPy, CuPy, PyTorch, and other compatible array libraries.
"""

import ezmsg.core as ez
import numpy as np
import numpy.typing as npt
from array_api_compat import get_namespace
from ezmsg.baseproc import (
    BaseStatefulTransformer,
    BaseTransformerUnit,
    processor_state,
    resolve_configured_stream_dim,
)
from ezmsg.util.messages.axisarray import AxisArray, slice_along_axis
from ezmsg.util.messages.util import replace

from .util.array import xp_copy
from .util.deprecation import warn_axis_deprecated


[docs] class DiffSettings(ez.Settings): axis: str | None = None """.. deprecated:: 3.8 Scheduled for removal in 4.0. The dimension messages accumulate along now comes from :attr:`~ezmsg.util.messages.axisarray.AxisArray.stream_dim`; see :mod:`ezmsg.sigproc.util.deprecation`.""" def __post_init__(self) -> None: warn_axis_deprecated(self) scale_by_fs: bool = False
[docs] @processor_state class DiffState: last_dat: npt.NDArray | None = None last_time: float | None = None
[docs] class DiffTransformer(BaseStatefulTransformer[DiffSettings, AxisArray, AxisArray, DiffState]): def _axis(self, message: AxisArray) -> str: return resolve_configured_stream_dim(self, message, self.settings.axis) def __call__(self, message: AxisArray) -> AxisArray: ax_idx = message.get_axis_idx(self._axis(message)) if message.data.shape[ax_idx] == 0: return message return super().__call__(message) async def __acall__(self, message: AxisArray) -> AxisArray: ax_idx = message.get_axis_idx(self._axis(message)) if message.data.shape[ax_idx] == 0: return message return await super().__acall__(message) def _reset_state(self, message) -> None: axis = self._axis(message) ax_idx = message.get_axis_idx(axis) # Copied for the same reason as in `_process`: state must never alias the # message's (possibly shared-memory-backed) buffer, even though this one # happens to be overwritten before the call returns. self.state.last_dat = xp_copy(slice_along_axis(message.data, slice(0, 1), axis=ax_idx)) if self.settings.scale_by_fs: ax_info = message.get_axis(axis) if hasattr(ax_info, "data"): if len(ax_info.data) > 1: self.state.last_time = 2 * ax_info.data[0] - ax_info.data[1] else: self.state.last_time = ax_info.data[0] - 0.001 def _process(self, message: AxisArray) -> AxisArray: xp = get_namespace(message.data) axis = self._axis(message) ax_idx = message.get_axis_idx(axis) diffs = xp.diff( xp.concat((self.state.last_dat, message.data), axis=ax_idx), axis=ax_idx, ) # Prepare last_dat for next iteration. Copied, not viewed, intentionally. self.state.last_dat = xp_copy(slice_along_axis(message.data, slice(-1, None), axis=ax_idx)) # Scale by fs if requested. This converts the diff to a derivative. e.g., diff of position becomes velocity. if self.settings.scale_by_fs: ax_info = message.get_axis(axis) if hasattr(ax_info, "data"): # ax_info.data is typically numpy for metadata, so use np.diff here dt = np.diff(np.concatenate(([self.state.last_time], ax_info.data))) # Expand dt dims to match diffs exp_sl = (None,) * ax_idx + (Ellipsis,) + (None,) * (message.data.ndim - ax_idx - 1) diffs /= xp.asarray(dt[exp_sl]) self.state.last_time = ax_info.data[-1] # For next iteration else: diffs /= ax_info.gain return replace(message, data=diffs)
[docs] class DiffUnit(BaseTransformerUnit[DiffSettings, AxisArray, AxisArray, DiffTransformer]): SETTINGS = DiffSettings
[docs] def diff(axis: str | None = None, scale_by_fs: bool = False) -> DiffTransformer: return DiffTransformer(DiffSettings(axis=axis, scale_by_fs=scale_by_fs))